Variant report

Variant	rs7668460
Chromosome Location	chr4:85604038-85604039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85502095..85504944-chr4:85602108..85604379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10007879	0.82[EUR][1000 genomes]
rs11097024	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12511112	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13145705	0.83[EUR][1000 genomes]
rs1385263	0.90[EUR][1000 genomes]
rs17009247	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17009249	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2170935	0.83[EUR][1000 genomes]
rs2218323	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3098928	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4529041	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6531775	0.83[EUR][1000 genomes]
rs6839516	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6847067	0.83[EUR][1000 genomes]
rs6858666	0.82[EUR][1000 genomes]
rs7685537	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85587800-85648400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:85589400-85609800	Strong transcription	Fetal Brain Female	brain
3	chr4:85589600-85604800	Weak transcription	Psoas Muscle	Psoas
4	chr4:85592200-85613200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:85595400-85612600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:85596200-85634600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:85596400-85610200	Strong transcription	Stomach Smooth Muscle	stomach
8	chr4:85596400-85612000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:85596600-85605800	Strong transcription	Brain Germinal Matrix	brain
10	chr4:85598200-85605800	Strong transcription	Fetal Stomach	stomach
11	chr4:85598600-85604600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:85598600-85632800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:85599600-85604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:85599600-85611600	Weak transcription	Hela-S3	cervix
15	chr4:85600000-85604200	Weak transcription	Fetal Brain Male	brain
16	chr4:85600600-85604200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:85600800-85604200	Weak transcription	Esophagus	oesophagus
18	chr4:85600800-85604200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:85600800-85604200	Weak transcription	Spleen	Spleen
20	chr4:85600800-85604400	Weak transcription	Right Ventricle	heart
21	chr4:85600800-85609200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:85600800-85611800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:85601000-85604200	Weak transcription	Gastric	stomach
24	chr4:85601600-85606000	Strong transcription	Rectal Smooth Muscle	rectum
25	chr4:85601800-85604200	Enhancers	Brain Angular Gyrus	brain
26	chr4:85601800-85605000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:85602000-85604400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:85602000-85605600	Genic enhancers	Fetal Intestine Large	intestine
29	chr4:85602000-85605800	Genic enhancers	Fetal Intestine Small	intestine
30	chr4:85602000-85606800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:85602000-85610000	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr4:85602200-85604200	Strong transcription	Left Ventricle	heart
33	chr4:85602200-85604200	Enhancers	HepG2	liver
34	chr4:85602200-85605000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:85602200-85605000	Genic enhancers	Adipose Nuclei	Adipose
36	chr4:85602200-85605200	Genic enhancers	Placenta	Placenta
37	chr4:85602200-85605800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:85602200-85606200	Genic enhancers	Brain Inferior Temporal Lobe	brain
39	chr4:85602200-85612000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr4:85602400-85604800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:85602400-85605200	Genic enhancers	Primary monocytes fromperipheralblood	blood
42	chr4:85602400-85606600	Genic enhancers	Brain Anterior Caudate	brain
43	chr4:85602600-85604600	Genic enhancers	Osteobl	bone
44	chr4:85602600-85604800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:85602600-85604800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:85602600-85605000	Genic enhancers	HSMM	muscle
47	chr4:85602600-85605400	Strong transcription	Colon Smooth Muscle	Colon
48	chr4:85602600-85630600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr4:85602800-85604200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:85602800-85604400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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