Variant report

Variant	rs11097024
Chromosome Location	chr4:85649557-85649558
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85638824..85641748-chr4:85648162..85650961,3	MCF-7	breast:
2	chr4:85648671..85650306-chr4:85882299..85884684,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10007879	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12511112	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13145705	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1385263	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17009247	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17009249	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2046402	0.81[EUR][1000 genomes]
rs2170935	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2218323	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869216	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs3098928	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36036245	0.86[EUR][1000 genomes]
rs4529041	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6531775	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67045782	0.81[EUR][1000 genomes]
rs6835046	0.82[EUR][1000 genomes]
rs6839516	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6847067	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6853486	0.88[CEU][hapmap]
rs6858666	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72664926	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7668460	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7685537	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85604400-85674800	Weak transcription	Small Intestine	intestine
2	chr4:85613600-85650200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
5	chr4:85620800-85663400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:85629200-85662400	Weak transcription	Colonic Mucosa	Colon
7	chr4:85630000-85656400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:85630000-85659000	Weak transcription	Right Ventricle	heart
9	chr4:85630200-85656400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:85632600-85658200	Weak transcription	A549	lung
11	chr4:85633400-85667800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:85637400-85658400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:85640200-85663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:85642200-85653600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:85642200-85656000	Weak transcription	NHEK	skin
17	chr4:85642600-85653600	Weak transcription	Fetal Brain Male	brain
18	chr4:85642600-85653600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:85642800-85653600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr4:85642800-85653800	Weak transcription	NHLF	lung
21	chr4:85642800-85654000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:85642800-85654000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:85642800-85654000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:85642800-85654200	Weak transcription	Ovary	ovary
25	chr4:85642800-85656400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:85642800-85656400	Weak transcription	Aorta	Aorta
27	chr4:85642800-85656400	Weak transcription	Pancreas	Pancrea
28	chr4:85642800-85658200	Weak transcription	Fetal Stomach	stomach
29	chr4:85642800-85658200	Weak transcription	Left Ventricle	heart
30	chr4:85642800-85658200	Weak transcription	Lung	lung
31	chr4:85642800-85659000	Weak transcription	Fetal Intestine Small	intestine
32	chr4:85642800-85660000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:85642800-85668000	Weak transcription	Spleen	Spleen
34	chr4:85642800-85678000	Weak transcription	Gastric	stomach
35	chr4:85643000-85659000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:85643200-85652600	Weak transcription	Fetal Brain Female	brain
37	chr4:85643200-85653600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr4:85643200-85656400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:85643400-85653800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:85643400-85654000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:85644200-85649600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:85644200-85660400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:85644400-85654200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:85644400-85656400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:85644600-85653600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr4:85644800-85652200	Weak transcription	HMEC	breast
47	chr4:85645000-85652600	Weak transcription	NH-A	brain
48	chr4:85645000-85654400	Weak transcription	HepG2	liver
49	chr4:85645000-85658000	Weak transcription	Brain Angular Gyrus	brain
50	chr4:85645200-85652200	Weak transcription	Brain Substantia Nigra	brain

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