Variant report

Variant	rs1385263
Chromosome Location	chr4:85704974-85704975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10007879	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10856852	0.82[JPT][hapmap]
rs11097024	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12511112	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13118671	0.89[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs13145705	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1484661	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1508670	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs17009247	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17009249	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17009317	0.89[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17009334	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs17009341	0.86[JPT][hapmap]
rs2046402	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2046404	0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs2170935	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2218323	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2869216	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3098928	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36036245	0.84[EUR][1000 genomes]
rs3747680	0.89[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs4529041	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6531775	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6531777	0.86[JPT][hapmap]
rs67045782	0.82[EUR][1000 genomes]
rs6825852	0.89[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs6829807	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs6835046	0.82[EUR][1000 genomes]
rs6838727	0.89[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs6839516	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6847067	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6847564	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6857555	0.83[AMR][1000 genomes]
rs6858666	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72664926	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7654035	0.87[JPT][hapmap]
rs7661609	0.86[JPT][hapmap]
rs7668460	0.90[EUR][1000 genomes]
rs7685537	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7694949	0.86[JPT][hapmap]
rs7699226	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
2	chr4:85672400-85707000	Weak transcription	Colonic Mucosa	Colon
3	chr4:85677200-85707200	Weak transcription	NHEK	skin
4	chr4:85683800-85732000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:85684800-85725000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:85688800-85725600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:85689600-85717200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:85690000-85722000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:85690800-85725600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:85691000-85724800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:85691600-85712200	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:85691600-85718400	Strong transcription	Placenta	Placenta
13	chr4:85691800-85716800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:85692000-85710400	Strong transcription	HUVEC	blood vessel
15	chr4:85692800-85709800	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:85694400-85711200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:85695200-85718000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:85696400-85757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:85697400-85705400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:85697400-85709200	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
22	chr4:85697800-85709000	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:85697800-85709600	Strong transcription	Fetal Lung	lung
24	chr4:85698000-85724600	Strong transcription	Liver	Liver
25	chr4:85699000-85710000	Strong transcription	Fetal Brain Female	brain
26	chr4:85699800-85705400	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:85700000-85716200	Strong transcription	Adipose Nuclei	Adipose
28	chr4:85700200-85724600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:85700400-85709000	Strong transcription	Brain Cingulate Gyrus	brain
30	chr4:85700400-85709800	Strong transcription	Brain Hippocampus Middle	brain
31	chr4:85700400-85709800	Strong transcription	NHDF-Ad	bronchial
32	chr4:85700400-85710000	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr4:85700400-85711400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:85700400-85716400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:85700400-85718000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:85700600-85705200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:85700600-85705600	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:85700600-85709000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:85700600-85709000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:85700600-85709200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:85700600-85709200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr4:85700600-85709200	Strong transcription	Fetal Muscle Trunk	muscle
43	chr4:85700600-85709200	Strong transcription	Left Ventricle	heart
44	chr4:85700600-85709800	Strong transcription	Brain Anterior Caudate	brain
45	chr4:85700600-85711600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:85700600-85712200	Strong transcription	Fetal Muscle Leg	muscle
47	chr4:85700600-85712600	Strong transcription	Fetal Intestine Large	intestine
48	chr4:85700800-85705200	Strong transcription	HMEC	breast
49	chr4:85700800-85709000	Strong transcription	Brain Angular Gyrus	brain
50	chr4:85700800-85709000	Strong transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links