Variant report

Variant	rs11099638
Chromosome Location	chr4:85152017-85152018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10000005	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11736000	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12506772	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1532357	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1532358	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2201488	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28857537	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs348700	0.83[AMR][1000 genomes]
rs348702	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348704	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5023577	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7657139	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7686616	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85145400-85152600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:85151200-85154400	Enhancers	Fetal Lung	lung
3	chr4:85151400-85152200	Enhancers	Fetal Stomach	stomach
4	chr4:85151400-85152800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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