Variant report
| Variant | rs7657139 |
|---|---|
| Chromosome Location | chr4:85156025-85156026 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10000005 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11099638 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11736000 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11945980 | 0.98[ASN][1000 genomes] |
| rs12506772 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1495143 | 0.97[ASN][1000 genomes] |
| rs1495147 | 0.97[ASN][1000 genomes] |
| rs1532357 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1532358 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17363778 | 0.98[ASN][1000 genomes] |
| rs2201487 | 0.98[ASN][1000 genomes] |
| rs2201488 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2220887 | 0.87[ASN][1000 genomes] |
| rs28462176 | 0.98[ASN][1000 genomes] |
| rs28857537 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs348702 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs348704 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs5023577 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7686616 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs903521 | 0.92[ASN][1000 genomes] |
| rs903522 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv524354 | chr4:85006975-85215142 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv829996 | chr4:85016673-85173300 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv879514 | chr4:85057124-85272572 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012379 | chr4:85071268-85205732 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85154200-85158400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr4:85154400-85156400 | Weak transcription | Fetal Lung | lung |
