Variant report

Variant	rs1532358
Chromosome Location	chr4:85159891-85159892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85159698..85160208-chr4:85372408..85372912,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10000005	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11099638	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11736000	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11945980	0.97[ASN][1000 genomes]
rs12506772	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1495143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1495147	0.98[ASN][1000 genomes]
rs1532357	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17363778	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2201487	0.97[ASN][1000 genomes]
rs2201488	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2220887	0.86[ASN][1000 genomes]
rs28462176	0.97[ASN][1000 genomes]
rs28857537	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348702	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348704	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5023577	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7657139	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7686616	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs903521	0.92[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs903522	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85157600-85171000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85158800-85160400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:85159200-85160000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:85159200-85160800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:85159400-85160000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:85159600-85160000	Enhancers	HSMMtube	muscle
7	chr4:85159600-85161000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:85159800-85160000	Enhancers	Fetal Lung	lung
9	chr4:85159800-85160400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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