Variant report

Variant	rs11112977
Chromosome Location	chr12:106805221-106805222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106804038..106806221-chr12:106840299..106842123,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11112997	0.95[ASN][1000 genomes]
rs11611533	0.82[ASN][1000 genomes]
rs12578405	0.82[ASN][1000 genomes]
rs12579099	0.95[ASN][1000 genomes]
rs12581541	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12581936	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851634	0.95[ASN][1000 genomes]
rs4964175	0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs6539267	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832510	chr12:106787730-106951140	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106753000-106811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:106753000-106815400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:106764000-106821000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:106764400-106811800	Weak transcription	HUVEC	blood vessel
5	chr12:106767200-106808600	Weak transcription	NHDF-Ad	bronchial
6	chr12:106773000-106828000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:106773200-106808600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:106774400-106834000	Weak transcription	Small Intestine	intestine
9	chr12:106774600-106819000	Weak transcription	Right Ventricle	heart
10	chr12:106774800-106811800	Weak transcription	NHEK	skin
11	chr12:106776800-106821800	Weak transcription	Brain Angular Gyrus	brain
12	chr12:106777400-106808200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr12:106779600-106821800	Weak transcription	Brain Substantia Nigra	brain
14	chr12:106782000-106810000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:106783600-106818800	Weak transcription	Fetal Heart	heart
16	chr12:106787000-106830200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr12:106787200-106808600	Weak transcription	NHLF	lung
18	chr12:106787600-106808400	Weak transcription	Psoas Muscle	Psoas
19	chr12:106787600-106856600	Weak transcription	GM12878-XiMat	blood
20	chr12:106787800-106852400	Weak transcription	Gastric	stomach
21	chr12:106787800-106852800	Weak transcription	Pancreas	Pancrea
22	chr12:106788000-106827200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:106789000-106808800	Weak transcription	HMEC	breast
24	chr12:106789000-106829800	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:106789200-106805800	Weak transcription	Left Ventricle	heart
26	chr12:106789200-106807400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr12:106789200-106811800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr12:106789200-106821400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr12:106789400-106808200	Weak transcription	Fetal Kidney	kidney
30	chr12:106789400-106808400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr12:106789400-106808600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr12:106789400-106812400	Weak transcription	Brain Anterior Caudate	brain
33	chr12:106789400-106819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:106789400-106821800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr12:106789600-106810400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr12:106790000-106819000	Weak transcription	Lung	lung
37	chr12:106790200-106808800	Weak transcription	HSMMtube	muscle
38	chr12:106790200-106811800	Weak transcription	HepG2	liver
39	chr12:106790400-106811800	Weak transcription	Adipose Nuclei	Adipose
40	chr12:106790400-106821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr12:106790600-106808800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr12:106790800-106808200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr12:106791000-106807200	Weak transcription	Hela-S3	cervix
44	chr12:106791200-106808000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr12:106791600-106808400	Weak transcription	Primary B cells from cord blood	blood
46	chr12:106791800-106806400	Weak transcription	A549	lung
47	chr12:106791800-106808400	Weak transcription	Placenta	Placenta
48	chr12:106791800-106808600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr12:106791800-106808600	Weak transcription	HSMM	muscle
50	chr12:106791800-106808800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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