Variant report

Variant	rs4964175
Chromosome Location	chr12:106753984-106753985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106753415..106755084-chr17:57829712..57831568,2	MCF-7	breast:
2	chr12:106693946..106698218-chr12:106750404..106754111,7	MCF-7	breast:
3	chr12:106753014..106755504-chr12:106757647..106759611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction
ENSG00000166046	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11112977	0.95[ASN][1000 genomes]
rs11112997	1.00[ASN][1000 genomes]
rs12579099	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581541	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12581936	0.95[ASN][1000 genomes]
rs12831519	0.87[ASW][hapmap]
rs17217845	0.87[ASW][hapmap];0.85[AMR][1000 genomes]
rs34762209	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3851634	1.00[ASN][1000 genomes]
rs6539267	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106752200-106754000	Flanking Active TSS	K562	blood
2	chr12:106752400-106754600	Weak transcription	Lung	lung
3	chr12:106752400-106754800	Weak transcription	Spleen	Spleen
4	chr12:106752400-106755200	Flanking Active TSS	Liver	Liver
5	chr12:106752400-106775400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:106752400-106791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:106752600-106754200	Enhancers	Fetal Heart	heart
8	chr12:106752600-106754200	Flanking Active TSS	HepG2	liver
9	chr12:106752600-106781800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:106752800-106754000	Enhancers	Fetal Intestine Small	intestine
11	chr12:106752800-106754000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr12:106752800-106754000	Enhancers	Gastric	stomach
13	chr12:106752800-106754000	Enhancers	Psoas Muscle	Psoas
14	chr12:106752800-106754800	Enhancers	Stomach Mucosa	stomach
15	chr12:106752800-106755000	Enhancers	Pancreas	Pancrea
16	chr12:106752800-106757800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:106752800-106757800	Weak transcription	Primary T cells from cord blood	blood
18	chr12:106752800-106758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr12:106752800-106760000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:106752800-106763200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:106752800-106763200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr12:106752800-106763200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:106752800-106763200	Weak transcription	Fetal Brain Male	brain
24	chr12:106752800-106763400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr12:106752800-106763400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:106752800-106763400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr12:106752800-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr12:106752800-106775800	Weak transcription	Aorta	Aorta
29	chr12:106753000-106754000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:106753000-106754000	Enhancers	Brain Germinal Matrix	brain
31	chr12:106753000-106754000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr12:106753000-106754000	Enhancers	A549	lung
33	chr12:106753000-106754000	Enhancers	Dnd41	blood
34	chr12:106753000-106754000	Weak transcription	GM12878-XiMat	blood
35	chr12:106753000-106754000	Enhancers	HUVEC	blood vessel
36	chr12:106753000-106754200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr12:106753000-106754600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr12:106753000-106754600	Enhancers	Fetal Intestine Large	intestine
39	chr12:106753000-106754600	Weak transcription	Left Ventricle	heart
40	chr12:106753000-106754800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr12:106753000-106757600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr12:106753000-106757800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:106753000-106757800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr12:106753000-106757800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:106753000-106757800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr12:106753000-106757800	Weak transcription	HSMMtube	muscle
47	chr12:106753000-106758000	Weak transcription	Brain Anterior Caudate	brain
48	chr12:106753000-106758000	Enhancers	Placenta	Placenta
49	chr12:106753000-106758000	Weak transcription	Fetal Stomach	stomach
50	chr12:106753000-106758000	Weak transcription	Stomach Smooth Muscle	stomach

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