Variant report

Variant	rs12579099
Chromosome Location	chr12:106765727-106765728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106750891..106752484-chr12:106763363..106765794,2	K562	blood:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11112977	0.95[ASN][1000 genomes]
rs11112997	1.00[ASN][1000 genomes]
rs12581541	0.95[ASN][1000 genomes]
rs12581936	0.95[ASN][1000 genomes]
rs17217845	0.84[AMR][1000 genomes]
rs34762209	0.84[AMR][1000 genomes]
rs3851634	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4964175	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539267	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106752400-106775400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:106752400-106791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106752600-106781800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:106752800-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:106752800-106775800	Weak transcription	Aorta	Aorta
6	chr12:106753000-106766000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:106753000-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:106753000-106772800	Weak transcription	Right Ventricle	heart
9	chr12:106753000-106774000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:106753000-106775800	Weak transcription	Brain Substantia Nigra	brain
11	chr12:106753000-106788800	Weak transcription	Thymus	Thymus
12	chr12:106753000-106791600	Weak transcription	Esophagus	oesophagus
13	chr12:106753000-106793200	Weak transcription	Colon Smooth Muscle	Colon
14	chr12:106753000-106811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:106753000-106815400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:106753200-106773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:106753200-106774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr12:106753600-106774600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr12:106753800-106774200	Weak transcription	Small Intestine	intestine
20	chr12:106754000-106769800	Weak transcription	Gastric	stomach
21	chr12:106754000-106774200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:106754000-106775800	Weak transcription	Brain Germinal Matrix	brain
23	chr12:106754200-106772200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr12:106754400-106775800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr12:106754800-106778400	Weak transcription	Stomach Mucosa	stomach
26	chr12:106755000-106768200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr12:106755000-106769600	Weak transcription	Lung	lung
28	chr12:106755000-106784600	Weak transcription	Pancreas	Pancrea
29	chr12:106755000-106789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr12:106755400-106796400	Weak transcription	Spleen	Spleen
31	chr12:106757000-106767200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr12:106757200-106773000	Weak transcription	Fetal Heart	heart
33	chr12:106757800-106767200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:106758600-106769800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr12:106758600-106775800	Weak transcription	HSMMtube	muscle
36	chr12:106761600-106770000	Weak transcription	Placenta	Placenta
37	chr12:106762000-106767200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr12:106762200-106774200	Weak transcription	Psoas Muscle	Psoas
39	chr12:106763000-106766800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr12:106763200-106770800	Strong transcription	Fetal Muscle Leg	muscle
41	chr12:106763400-106766800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr12:106763600-106772000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr12:106763600-106772800	Weak transcription	Brain Angular Gyrus	brain
44	chr12:106763600-106774000	Weak transcription	Colonic Mucosa	Colon
45	chr12:106763800-106781400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr12:106763800-106783400	Weak transcription	Fetal Brain Male	brain
47	chr12:106764000-106766400	Weak transcription	Primary B cells from cord blood	blood
48	chr12:106764000-106767000	Strong transcription	HSMM	muscle
49	chr12:106764000-106769400	Weak transcription	Ovary	ovary
50	chr12:106764000-106769800	Weak transcription	Fetal Kidney	kidney

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