Variant report

Variant	rs12581936
Chromosome Location	chr12:106854071-106854072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11112977	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112997	0.95[ASN][1000 genomes]
rs11611533	0.82[ASN][1000 genomes]
rs12578405	0.82[ASN][1000 genomes]
rs12579099	0.95[ASN][1000 genomes]
rs12581541	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs17218455	1.00[ASW][hapmap]
rs3851634	0.95[ASN][1000 genomes]
rs4964175	0.82[JPT][hapmap];0.93[YRI][hapmap];0.95[ASN][1000 genomes]
rs6539267	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832510	chr12:106787730-106951140	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12581936	SPIC	cis	cerebellum	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106787600-106856600	Weak transcription	GM12878-XiMat	blood
2	chr12:106812000-106855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:106813000-106864800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:106813200-106855800	Weak transcription	NHDF-Ad	bronchial
5	chr12:106813200-106864800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:106814400-106855800	Weak transcription	Stomach Mucosa	stomach
7	chr12:106819400-106855600	Weak transcription	Right Ventricle	heart
8	chr12:106823200-106858000	Weak transcription	Psoas Muscle	Psoas
9	chr12:106824800-106866400	Weak transcription	NHLF	lung
10	chr12:106828600-106905800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:106828800-106855800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:106828800-106856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr12:106829000-106867200	Weak transcription	Colon Smooth Muscle	Colon
14	chr12:106830400-106864600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:106830400-106865800	Weak transcription	K562	blood
16	chr12:106831200-106856200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:106831400-106855200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr12:106831600-106856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr12:106831600-106856400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr12:106833000-106864400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:106840000-106864600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:106840800-106855600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:106841800-106865000	Weak transcription	A549	lung
24	chr12:106846400-106864000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:106846400-106864600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:106846800-106856000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:106847400-106856000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:106848400-106855800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr12:106848400-106856000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr12:106848400-106856800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:106849000-106854800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:106849000-106859400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:106849200-106854400	Strong transcription	Dnd41	blood
34	chr12:106849400-106856000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr12:106849600-106855000	Weak transcription	Hela-S3	cervix
36	chr12:106849600-106859400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr12:106849800-106857000	Weak transcription	Fetal Brain Male	brain
38	chr12:106850000-106856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr12:106850400-106857000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr12:106850400-106858200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr12:106850600-106854200	Weak transcription	HSMMtube	muscle
42	chr12:106850600-106854400	Strong transcription	Osteobl	bone
43	chr12:106850600-106856000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:106850600-106856000	Strong transcription	Primary B cells from cord blood	blood
45	chr12:106851000-106864800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr12:106851200-106856000	Strong transcription	Adipose Nuclei	Adipose
47	chr12:106851200-106857400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:106851400-106855800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr12:106851400-106856000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr12:106851400-106856000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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