Variant report

Variant	rs1111702
Chromosome Location	chr6:164180478-164180479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1111703	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570409	0.84[ASN][1000 genomes]
rs4709013	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4709750	0.84[ASN][1000 genomes]
rs4709751	0.95[ASN][1000 genomes]
rs6455917	0.95[ASN][1000 genomes]
rs6910076	0.95[ASN][1000 genomes]
rs6932044	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759076	0.95[ASN][1000 genomes]
rs9356138	0.95[ASN][1000 genomes]
rs9365606	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164177600-164182200	Weak transcription	HSMM	muscle
3	chr6:164178600-164182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:164178600-164185600	Weak transcription	Left Ventricle	heart
5	chr6:164178800-164182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:164178800-164185400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:164179000-164185400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:164179000-164186000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:164179600-164180600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:164180000-164185800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:164180200-164181000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:164180200-164181000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:164180400-164180600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:164180400-164180600	Enhancers	K562	blood
15	chr6:164180400-164180800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:164180400-164180800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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