Variant report

Variant	rs7759076
Chromosome Location	chr6:164167501-164167502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164167299..164170044-chr6:164171641..164173179,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1111702	0.95[ASN][1000 genomes]
rs1111703	0.95[ASN][1000 genomes]
rs1570409	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709013	0.91[ASN][1000 genomes]
rs4709750	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709751	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455917	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910076	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932044	0.95[ASN][1000 genomes]
rs9356138	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365606	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164160600-164168000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:164164600-164167800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:164164800-164167800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:164165400-164167600	Enhancers	Placenta	Placenta
6	chr6:164165600-164167600	Enhancers	Fetal Muscle Trunk	muscle
7	chr6:164165600-164167800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:164165800-164167600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:164166200-164167600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:164166200-164167600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:164166200-164167600	Enhancers	NH-A	brain
12	chr6:164166200-164168600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:164166400-164167800	Enhancers	HSMM	muscle
14	chr6:164166400-164169000	Weak transcription	Right Ventricle	heart
15	chr6:164166400-164170200	Weak transcription	Fetal Brain Male	brain
16	chr6:164166600-164167600	Enhancers	NHEK	skin
17	chr6:164166600-164167800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:164166600-164167800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:164166800-164173600	Enhancers	Fetal Heart	heart
20	chr6:164167200-164168600	Weak transcription	Left Ventricle	heart
21	chr6:164167200-164169200	Weak transcription	Brain Germinal Matrix	brain
22	chr6:164167200-164169600	Weak transcription	Right Atrium	heart
23	chr6:164167400-164168000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:164167400-164168600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:164167400-164169000	Weak transcription	Esophagus	oesophagus
26	chr6:164167400-164171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:164167400-164171600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:164167400-164172000	Weak transcription	HSMMtube	muscle

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