Variant report

Variant	rs6910076
Chromosome Location	chr6:164165172-164165173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164164066..164167011-chr6:164170527..164172238,3	K562	blood:
2	chr6:164161305..164164067-chr6:164164278..164167269,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1111702	0.95[ASN][1000 genomes]
rs1111703	0.95[ASN][1000 genomes]
rs1570409	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709013	0.91[ASN][1000 genomes]
rs4709750	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455917	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932044	0.95[ASN][1000 genomes]
rs7759076	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9356138	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365606	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164160600-164168000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:164161000-164165200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:164161200-164166200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:164161200-164166200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:164161200-164166800	Weak transcription	Fetal Lung	lung
6	chr6:164161600-164165800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:164161800-164165600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:164161800-164166200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:164162200-164166000	Enhancers	Fetal Heart	heart
10	chr6:164162400-164166400	Enhancers	Right Ventricle	heart
11	chr6:164163200-164165400	Weak transcription	Right Atrium	heart
12	chr6:164163200-164166000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:164163400-164165400	Weak transcription	Brain Germinal Matrix	brain
15	chr6:164163800-164165600	Weak transcription	Lung	lung
16	chr6:164164600-164167800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:164164800-164165600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr6:164164800-164167200	Enhancers	Left Ventricle	heart
19	chr6:164164800-164167800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:164165000-164165200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:164165000-164167000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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