Variant report

Variant	rs9365606
Chromosome Location	chr6:164176803-164176804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1111702	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111703	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570409	0.84[ASN][1000 genomes]
rs4709013	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4709750	0.84[ASN][1000 genomes]
rs4709751	0.95[ASN][1000 genomes]
rs6455917	0.95[ASN][1000 genomes]
rs6910076	0.95[ASN][1000 genomes]
rs6932044	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759076	0.95[ASN][1000 genomes]
rs9356138	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164167800-164177200	Weak transcription	HSMM	muscle
3	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:164172400-164180400	Weak transcription	K562	blood
5	chr6:164172600-164178400	Weak transcription	Right Atrium	heart
6	chr6:164173400-164178400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:164174800-164179200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:164175000-164179600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:164175600-164177200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:164176000-164177800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:164176000-164179200	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:164176200-164178200	Enhancers	GM12878-XiMat	blood
13	chr6:164176200-164178800	Enhancers	Primary B cells from cord blood	blood
14	chr6:164176200-164179000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:164176600-164178000	Enhancers	Primary T cells from cord blood	blood
16	chr6:164176600-164178400	Weak transcription	Left Ventricle	heart
17	chr6:164176800-164178800	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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