Variant report

Variant	rs11118641
Chromosome Location	chr1:221240797-221240798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10746405	0.82[ASN][1000 genomes]
rs10863578	0.85[ASN][1000 genomes]
rs11118648	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118652	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118653	0.92[ASN][1000 genomes]
rs12121213	0.80[ASN][1000 genomes]
rs12127195	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1596173	0.92[ASN][1000 genomes]
rs17009346	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009398	0.94[ASN][1000 genomes]
rs17009536	0.81[ASN][1000 genomes]
rs1935157	0.81[ASN][1000 genomes]
rs3920857	0.81[ASN][1000 genomes]
rs4142348	0.86[ASN][1000 genomes]
rs4142351	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4391670	0.82[ASN][1000 genomes]
rs4427411	0.88[ASN][1000 genomes]
rs4625285	0.85[ASN][1000 genomes]
rs4846682	0.82[ASN][1000 genomes]
rs4846684	0.83[ASN][1000 genomes]
rs4846685	0.83[ASN][1000 genomes]
rs55966903	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58513421	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819242	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6670400	0.82[ASN][1000 genomes]
rs6687526	0.83[ASN][1000 genomes]
rs6687905	0.82[ASN][1000 genomes]
rs6693821	0.83[ASN][1000 genomes]
rs6698945	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs715300	0.93[ASN][1000 genomes]
rs72742507	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7354867	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7511784	0.93[ASN][1000 genomes]
rs7512831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517729	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7522861	0.81[ASN][1000 genomes]
rs7523927	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7526270	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7542237	0.82[ASN][1000 genomes]
rs7544056	0.92[ASN][1000 genomes]
rs7554672	0.97[ASN][1000 genomes]
rs9431425	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11118641	LYPLAL1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221239600-221243600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr1:221239600-221247000	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:221239800-221242400	Enhancers	Primary B cells from cord blood	blood
4	chr1:221240200-221240800	Enhancers	Fetal Muscle Leg	muscle
5	chr1:221240200-221241400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:221240200-221242400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:221240400-221241000	Enhancers	Primary hematopoietic stem cells	blood
8	chr1:221240400-221241400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:221240400-221241600	Weak transcription	Fetal Lung	lung
10	chr1:221240400-221241800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links