Variant report

Variant	rs4625285
Chromosome Location	chr1:221227247-221227248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10746405	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863578	0.93[ASN][1000 genomes]
rs11118641	0.85[ASN][1000 genomes]
rs11118648	0.81[ASN][1000 genomes]
rs11118652	0.82[ASN][1000 genomes]
rs11118653	0.83[ASN][1000 genomes]
rs1596173	0.83[ASN][1000 genomes]
rs17009346	0.85[ASN][1000 genomes]
rs17009398	0.85[ASN][1000 genomes]
rs4142348	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4142351	0.82[ASN][1000 genomes]
rs4391670	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4846682	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4846684	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846685	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55966903	0.85[ASN][1000 genomes]
rs58513421	0.85[ASN][1000 genomes]
rs61819242	0.82[ASN][1000 genomes]
rs6661535	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6687526	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6687905	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6698945	0.82[ASN][1000 genomes]
rs715300	0.83[ASN][1000 genomes]
rs72742507	0.82[ASN][1000 genomes]
rs7354867	0.82[ASN][1000 genomes]
rs7416455	0.81[AFR][1000 genomes]
rs7511784	0.83[ASN][1000 genomes]
rs7512831	0.85[ASN][1000 genomes]
rs7517569	0.80[EUR][1000 genomes]
rs7517729	0.82[ASN][1000 genomes]
rs7523927	0.81[ASN][1000 genomes]
rs7526270	0.82[ASN][1000 genomes]
rs7542237	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7544056	0.83[ASN][1000 genomes]
rs7554672	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221227000-221228000	Enhancers	Liver	Liver
2	chr1:221227200-221228000	Enhancers	Pancreas	Pancrea

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