Variant report

Variant	rs7354867
Chromosome Location	chr1:221268907-221268908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10863578	0.82[ASN][1000 genomes]
rs11118641	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118648	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118652	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118653	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12121213	0.83[ASN][1000 genomes]
rs12123182	0.82[ASN][1000 genomes]
rs12127195	0.90[ASN][1000 genomes]
rs12140672	0.81[ASN][1000 genomes]
rs1596173	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17009346	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17009398	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17009529	0.81[ASN][1000 genomes]
rs17009536	0.83[ASN][1000 genomes]
rs1935157	0.84[ASN][1000 genomes]
rs2039956	0.81[ASN][1000 genomes]
rs3920857	0.83[ASN][1000 genomes]
rs4142348	0.83[ASN][1000 genomes]
rs4142351	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420085	0.81[ASN][1000 genomes]
rs4427411	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4625285	0.82[ASN][1000 genomes]
rs4846684	0.81[ASN][1000 genomes]
rs4846685	0.81[ASN][1000 genomes]
rs55966903	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57489853	0.81[ASN][1000 genomes]
rs58513421	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59098418	0.81[ASN][1000 genomes]
rs61819242	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670400	0.82[ASN][1000 genomes]
rs6687526	0.81[ASN][1000 genomes]
rs6693821	0.85[ASN][1000 genomes]
rs6698945	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67635817	0.81[ASN][1000 genomes]
rs715300	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72742507	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511784	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7512831	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7517729	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522861	0.83[ASN][1000 genomes]
rs7523927	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7526270	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544056	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7554672	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9431425	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221259800-221270000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:221263800-221271400	Weak transcription	Placenta	Placenta
3	chr1:221267800-221270200	Weak transcription	NHDF-Ad	bronchial
4	chr1:221267800-221270400	Weak transcription	HSMM	muscle
5	chr1:221267800-221271400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:221268000-221269400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:221268000-221270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:221268000-221270200	Weak transcription	HSMMtube	muscle
9	chr1:221268000-221270400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:221268000-221270600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:221268000-221270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:221268000-221270800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:221268000-221270800	Weak transcription	NHLF	lung
14	chr1:221268000-221271000	Weak transcription	NH-A	brain
15	chr1:221268000-221271200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:221268000-221271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:221268000-221271400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:221268000-221271800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:221268000-221272200	Weak transcription	Lung	lung
20	chr1:221268000-221273600	Weak transcription	Fetal Lung	lung
21	chr1:221268200-221270200	Weak transcription	Osteobl	bone
22	chr1:221268200-221270600	Weak transcription	A549	lung
23	chr1:221268400-221269800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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