Variant report

Variant	rs7511784
Chromosome Location	chr1:221291588-221291589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10746405	0.81[ASN][1000 genomes]
rs10863578	0.83[ASN][1000 genomes]
rs11118641	0.93[ASN][1000 genomes]
rs11118648	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118652	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118662	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11118663	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11118664	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12120171	0.86[EUR][1000 genomes]
rs12121213	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122167	0.89[EUR][1000 genomes]
rs12123182	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12124230	0.86[EUR][1000 genomes]
rs12127195	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12128432	0.86[EUR][1000 genomes]
rs12140672	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1341619	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1539140	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1596173	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17009346	0.93[ASN][1000 genomes]
rs17009398	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17009529	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17009536	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935157	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2039956	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3920857	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4142348	0.84[ASN][1000 genomes]
rs4142351	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4391670	0.81[ASN][1000 genomes]
rs4420085	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4427411	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4625285	0.83[ASN][1000 genomes]
rs4846682	0.81[ASN][1000 genomes]
rs4846684	0.82[ASN][1000 genomes]
rs4846685	0.82[ASN][1000 genomes]
rs55966903	0.93[ASN][1000 genomes]
rs57489853	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58513421	0.93[ASN][1000 genomes]
rs59098418	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61819242	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670400	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6687526	0.82[ASN][1000 genomes]
rs6687905	0.81[ASN][1000 genomes]
rs6693821	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6698945	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67635817	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs715300	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742507	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7354867	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7512831	0.93[ASN][1000 genomes]
rs7515181	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7517729	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7522861	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7523927	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526270	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7539794	0.86[EUR][1000 genomes]
rs7542237	0.81[ASN][1000 genomes]
rs7544056	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7554672	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9431057	0.89[EUR][1000 genomes]
rs9431425	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9431431	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7511784	LYPLAL1	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221289400-221291600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:221289400-221292000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:221289400-221292800	Enhancers	Adipose Nuclei	Adipose
4	chr1:221289400-221293400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:221289600-221292800	Enhancers	Liver	Liver
6	chr1:221289800-221291600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:221289800-221292200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:221290000-221297400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:221290200-221292200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:221290400-221291800	Enhancers	NH-A	brain
11	chr1:221290400-221292200	Flanking Active TSS	A549	lung
12	chr1:221290400-221292400	Enhancers	NHDF-Ad	bronchial
13	chr1:221290400-221292600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:221290400-221292600	Enhancers	Psoas Muscle	Psoas
15	chr1:221290400-221292600	Enhancers	HSMM	muscle
16	chr1:221290400-221292800	Enhancers	NHLF	lung
17	chr1:221290600-221291600	Enhancers	Fetal Heart	heart
18	chr1:221290600-221291600	Flanking Active TSS	Osteobl	bone
19	chr1:221290600-221291800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:221290600-221291800	Enhancers	Fetal Kidney	kidney
21	chr1:221290600-221292000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:221290600-221292200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:221290800-221291600	Weak transcription	Right Ventricle	heart
24	chr1:221290800-221292000	Enhancers	Fetal Lung	lung
25	chr1:221290800-221292000	Weak transcription	Pancreas	Pancrea
26	chr1:221290800-221292200	Enhancers	Colon Smooth Muscle	Colon
27	chr1:221291000-221291600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr1:221291000-221291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:221291000-221291800	Enhancers	Brain Germinal Matrix	brain
30	chr1:221291000-221291800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr1:221291200-221291600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:221291200-221292000	Enhancers	Brain Hippocampus Middle	brain
33	chr1:221291200-221292200	Enhancers	Brain Substantia Nigra	brain
34	chr1:221291400-221291600	Enhancers	HSMMtube	muscle
35	chr1:221291400-221291800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:221291400-221292600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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