Variant report
| Variant | rs11119246 |
|---|---|
| Chromosome Location | chr1:209383932-209383933 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:209383099..209385008-chr1:209391993..209394631,2 | MCF-7 | breast: | |
| 2 | chr1:209383657..209385481-chr1:209417039..209419138,2 | MCF-7 | breast: | |
| 3 | chr1:209382422..209384753-chr1:209511940..209513719,2 | MCF-7 | breast: | |
| 4 | chr1:209376128..209379505-chr1:209382757..209384972,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11119236 | 1.00[AMR][1000 genomes] |
| rs11119243 | 1.00[AMR][1000 genomes] |
| rs11119249 | 1.00[AMR][1000 genomes] |
| rs11119250 | 1.00[AMR][1000 genomes] |
| rs12067172 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12071550 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12072789 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12073260 | 1.00[AMR][1000 genomes] |
| rs12076575 | 1.00[AMR][1000 genomes] |
| rs12077614 | 1.00[AMR][1000 genomes] |
| rs12079171 | 1.00[AMR][1000 genomes] |
| rs12079883 | 1.00[AMR][1000 genomes] |
| rs12080089 | 1.00[AMR][1000 genomes] |
| rs12081438 | 1.00[AMR][1000 genomes] |
| rs12088612 | 1.00[AMR][1000 genomes] |
| rs12095589 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12096528 | 1.00[AMR][1000 genomes] |
| rs12354318 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6680924 | 0.90[YRI][hapmap] |
| rs9782963 | 1.00[AMR][1000 genomes] |
| rs9782983 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832481 | chr1:209371276-209540333 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv832492 | chr1:209383771-209589312 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:209383400-209390200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
