Variant report

Variant	rs12071550
Chromosome Location	chr1:209397450-209397451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11119236	1.00[AMR][1000 genomes]
rs11119243	1.00[AMR][1000 genomes]
rs11119246	1.00[AMR][1000 genomes]
rs11119249	1.00[AMR][1000 genomes]
rs11119250	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067172	1.00[AMR][1000 genomes]
rs12072789	1.00[AMR][1000 genomes]
rs12073260	1.00[AMR][1000 genomes]
rs12076575	1.00[AMR][1000 genomes]
rs12077614	1.00[AMR][1000 genomes]
rs12079171	1.00[AMR][1000 genomes]
rs12079883	1.00[AMR][1000 genomes]
rs12080089	1.00[AMR][1000 genomes]
rs12081438	1.00[AMR][1000 genomes]
rs12088612	1.00[AMR][1000 genomes]
rs12095589	1.00[AMR][1000 genomes]
rs12096528	1.00[AMR][1000 genomes]
rs12354318	1.00[AMR][1000 genomes]
rs6680924	0.89[YRI][hapmap]
rs9782963	1.00[AMR][1000 genomes]
rs9782983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209394000-209397600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:209394000-209397600	Weak transcription	NHEK	skin
3	chr1:209396400-209399800	Weak transcription	Fetal Brain Male	brain
4	chr1:209396600-209398600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:209397200-209398000	Enhancers	Fetal Lung	lung
6	chr1:209397200-209398000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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