Variant report

Variant	rs12073260
Chromosome Location	chr1:209334120-209334121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11119236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11119243	1.00[AMR][1000 genomes]
rs11119246	1.00[AMR][1000 genomes]
rs11119249	1.00[AMR][1000 genomes]
rs11119250	1.00[AMR][1000 genomes]
rs12067172	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071550	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12072789	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076575	1.00[AMR][1000 genomes]
rs12077614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088612	1.00[AMR][1000 genomes]
rs12095589	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096528	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12354318	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6680924	0.90[YRI][hapmap]
rs9782963	1.00[AMR][1000 genomes]
rs9782983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873137	chr1:209301571-209338673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522816	chr1:209325038-209342622	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209329600-209335800	Weak transcription	HSMM	muscle
2	chr1:209333200-209334200	Enhancers	HSMMtube	muscle
3	chr1:209333400-209334200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:209333600-209334200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:209334000-209335000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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