Variant report

Variant	rs11129178
Chromosome Location	chr3:25099021-25099022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11715684	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11717464	0.82[AMR][1000 genomes]
rs12639346	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13060459	0.85[AMR][1000 genomes]
rs4858695	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6550939	0.83[EUR][1000 genomes]
rs6550941	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6786779	0.83[EUR][1000 genomes]
rs9310769	0.83[EUR][1000 genomes]
rs9811936	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9820531	0.83[EUR][1000 genomes]
rs9820537	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9823025	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs992844	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs993803	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs993805	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25097400-25099600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:25097400-25099800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:25097400-25099800	Enhancers	Fetal Lung	lung
4	chr3:25098000-25100000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:25098600-25099600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:25099000-25099800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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