Variant report

Variant	rs6550939
Chromosome Location	chr3:25091481-25091482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11129178	0.83[EUR][1000 genomes]
rs11715684	0.80[EUR][1000 genomes]
rs12639346	0.85[EUR][1000 genomes]
rs1604007	0.94[ASN][1000 genomes]
rs4858695	0.84[EUR][1000 genomes]
rs6550941	0.86[EUR][1000 genomes]
rs6786779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791983	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9310769	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811936	0.84[EUR][1000 genomes]
rs9820531	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820537	0.85[EUR][1000 genomes]
rs9823025	0.83[EUR][1000 genomes]
rs988268	0.96[ASN][1000 genomes]
rs993804	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs993805	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6550939	THRB	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25087000-25092600	Weak transcription	Fetal Kidney	kidney
2	chr3:25091000-25097400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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