Variant report

Variant	rs11129975
Chromosome Location	chr3:42835985-42835986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42824804..42827092-chr3:42834818..42838109,3	K562	blood:
2	chr3:42830549..42834930-chr3:42834971..42839390,5	K562	blood:
3	chr3:42834430..42837380-chr3:42848485..42850165,2	K562	blood:
4	chr3:42828413..42830018-chr3:42834940..42837026,2	K562	blood:
5	chr3:42833054..42839463-chr3:42839853..42848908,22	MCF-7	breast:
6	chr3:42821025..42823114-chr3:42833487..42836032,2	MCF-7	breast:
7	chr3:42833203..42834842-chr3:42834877..42836763,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181061	Chromatin interaction
ENSG00000144648	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11129976	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11129977	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11922832	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12491179	0.85[EUR][1000 genomes]
rs12639142	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13070029	0.97[EUR][1000 genomes]
rs13096498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372110	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs339671	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs339731	0.83[EUR][1000 genomes]
rs34868846	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35584330	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3843369	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846063	0.90[EUR][1000 genomes]
rs4683332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683335	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6442067	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6779561	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7641046	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42814800-42840800	Weak transcription	Spleen	Spleen
2	chr3:42815200-42836400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:42815200-42837400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:42815200-42842000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:42815200-42842200	Weak transcription	Aorta	Aorta
6	chr3:42815200-42842400	Weak transcription	Psoas Muscle	Psoas
7	chr3:42815400-42837200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:42815400-42844000	Weak transcription	NHDF-Ad	bronchial
9	chr3:42815600-42841800	Weak transcription	Thymus	Thymus
10	chr3:42815600-42842000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:42815600-42842000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:42816200-42837600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:42821400-42837400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:42822000-42841200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:42822400-42837200	Weak transcription	Brain Angular Gyrus	brain
16	chr3:42822400-42843400	Weak transcription	Small Intestine	intestine
17	chr3:42822800-42837000	Weak transcription	Brain Anterior Caudate	brain
18	chr3:42822800-42841600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:42822800-42842800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:42822800-42844000	Weak transcription	Fetal Kidney	kidney
21	chr3:42822800-42844200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:42823000-42842800	Weak transcription	Fetal Brain Male	brain
23	chr3:42823600-42836400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:42824000-42836400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:42824400-42836400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:42825200-42843800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:42825600-42841000	Weak transcription	Gastric	stomach
28	chr3:42826800-42838400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:42827600-42844600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:42828000-42840800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:42828400-42841000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:42828600-42844000	Weak transcription	NH-A	brain
33	chr3:42829800-42838200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:42830000-42840800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:42830200-42841000	Weak transcription	Stomach Mucosa	stomach
36	chr3:42830400-42844000	Weak transcription	NHEK	skin
37	chr3:42830800-42841800	Weak transcription	Fetal Thymus	thymus
38	chr3:42832000-42836400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:42832400-42836400	Strong transcription	HMEC	breast
40	chr3:42832600-42836600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:42832600-42838400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:42832800-42836000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:42832800-42842000	Weak transcription	Fetal Heart	heart
44	chr3:42832800-42843800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:42833200-42836200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:42833200-42836400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:42834400-42836200	Strong transcription	GM12878-XiMat	blood
48	chr3:42834400-42838000	Strong transcription	K562	blood
49	chr3:42834800-42836000	Strong transcription	Hela-S3	cervix
50	chr3:42834800-42836400	Strong transcription	HSMM	muscle

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