Variant report

Variant	rs3843369
Chromosome Location	chr3:42807048-42807049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42804568..42808047-chr3:42844352..42847705,4	K562	blood:

Variant related genes	Relation type
ENSG00000144648	Chromatin interaction
ENSG00000181061	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11129975	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11129976	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11129977	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11922832	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12491179	0.92[EUR][1000 genomes]
rs12639142	0.90[EUR][1000 genomes]
rs13070029	0.90[EUR][1000 genomes]
rs13096498	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372110	0.95[EUR][1000 genomes]
rs339671	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs339684	0.80[EUR][1000 genomes]
rs339731	0.90[EUR][1000 genomes]
rs34868846	0.90[EUR][1000 genomes]
rs35584330	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846063	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4683332	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683335	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6442067	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6779561	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641046	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1846968	chr3:42787469-42832979	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42778000-42811000	Weak transcription	Spleen	Spleen
2	chr3:42789800-42807600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:42791800-42807200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:42793600-42811000	Weak transcription	Lung	lung
5	chr3:42795600-42814000	Weak transcription	Gastric	stomach
6	chr3:42795600-42814400	Weak transcription	Aorta	Aorta
7	chr3:42800400-42808600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:42803000-42814200	Weak transcription	Right Atrium	heart
9	chr3:42804200-42814200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:42804400-42807400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:42804800-42807400	Weak transcription	Adipose Nuclei	Adipose
12	chr3:42805000-42807400	Weak transcription	HepG2	liver
13	chr3:42805000-42813800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:42805800-42807600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:42805800-42807800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:42805800-42808400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr3:42806000-42807400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:42806200-42807200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:42806200-42809800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:42806400-42807200	Weak transcription	Primary B cells from cord blood	blood
21	chr3:42806800-42807600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:42807000-42807600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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