Variant report

Variant	rs35584330
Chromosome Location	chr3:42811240-42811241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:42811215-42811265	HEEpiC	esophagus:	n/a
2	chr3:42811215-42811265	HL-60	blood:	n/a
3	chr3:42811215-42811265	SK-N-SH_RA	brain:	n/a
4	chr3:42811215-42811265	PrEC	prostate:	n/a
5	chr3:42811215-42811265	HCPEpiC	choroid plexus:	n/a
6	chr3:42811215-42811265	NB4	blood:	n/a
7	chr3:42811215-42811265	AG04450	lung:	fetal
8	chr3:42811215-42811265	LNCaP	prostate:	n/a
9	chr3:42811215-42811265	HMEC	breast:	n/a
10	chr3:42811215-42811265	HRCEpiC	kidney:	n/a
11	chr3:42811215-42811265	ECC-1	luminal epithelium:	n/a
12	chr3:42811215-42811265	Hela-S3	cervix:	n/a
13	chr3:42811215-42811265	SKMC	muscle:	n/a
14	chr3:42811215-42811265	HAEpiC	amniotic membrane:	n/a
15	chr3:42811215-42811265	GM12878	blood:	n/a
16	chr3:42811215-42811265	Hepatocyte	liver:	n/a
17	chr3:42811215-42811265	HRE	kidney:	n/a
18	chr3:42811215-42811265	AG09319	gingival:	n/a
19	chr3:42811215-42811265	HCT-116	colon:	n/a
20	chr3:42811215-42811265	GM12892	blood:	n/a
21	chr3:42811215-42811265	Jurkat	blood:	n/a
22	chr3:42811215-42811265	U87	brain:	n/a
23	chr3:42811215-42811265	AG09309	skin:	n/a
24	chr3:42811215-42811265	HRPEpiC	eye:	n/a
25	chr3:42811215-42811265	BJ	skin:	n/a
26	chr3:42811215-42811265	AG04449	skin:	fetal
27	chr3:42811215-42811265	ProgFib	skin:	n/a
28	chr3:42811215-42811265	CMK	blood:	n/a
29	chr3:42811215-42811265	SK-N-MC	brain:	n/a
30	chr3:42811215-42811265	T-47D	breast:	n/a
31	chr3:42811215-42811265	HUVEC	blood vessel:	n/a
32	chr3:42811215-42811265	NHDF-neo	bronchial:	n/a
33	chr3:42811215-42811265	PANC-1	pancreas:	n/a
34	chr3:42811215-42811265	IMR90	lung:	fetal
35	chr3:42811215-42811265	Caco-2	colon:	n/a
36	chr3:42811215-42811265	MCF-7	breast:	n/a
37	chr3:42811215-42811265	GM19239	blood:	n/a
38	chr3:42811215-42811265	MCF10A-Er-Src	breast:	n/a
39	chr3:42811215-42811265	BE2_C	brain:	n/a
40	chr3:42811215-42811265	HCF	heart:	n/a
41	chr3:42811215-42811265	SAEC	small airway:	n/a
42	chr3:42811215-42811265	PFSK-1	brain:	n/a
43	chr3:42811215-42811265	K562	blood:	n/a
44	chr3:42811215-42811265	GM06990	blood:	n/a
45	chr3:42811215-42811265	AG10803	skin:	n/a
46	chr3:42811215-42811265	HEK293	kidney:	embryo
47	chr3:42811215-42811265	HNPCEpiC	eye:	n/a
48	chr3:42811215-42811265	RPTEC	kidney:	n/a
49	chr3:42811215-42811265	AoSMC	blood vessel:	n/a
50	chr3:42811215-42811265	NHBE	bronchial:	n/a

No data

Variant related genes	Relation type
ENSG00000225611	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11129975	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11129976	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11129977	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11922832	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12491179	0.90[EUR][1000 genomes]
rs12639142	0.88[EUR][1000 genomes]
rs13070029	0.88[EUR][1000 genomes]
rs13096498	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372110	0.93[EUR][1000 genomes]
rs339671	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs339731	0.88[EUR][1000 genomes]
rs34868846	0.88[EUR][1000 genomes]
rs3843369	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846063	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4683332	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683335	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6442067	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6779561	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641046	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1846968	chr3:42787469-42832979	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42795600-42814000	Weak transcription	Gastric	stomach
2	chr3:42795600-42814400	Weak transcription	Aorta	Aorta
3	chr3:42803000-42814200	Weak transcription	Right Atrium	heart
4	chr3:42804200-42814200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:42805000-42813800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:42807400-42813400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:42807400-42814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:42808000-42812400	Weak transcription	HepG2	liver
9	chr3:42808000-42814000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:42808000-42814200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:42808800-42813200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:42811000-42811600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:42811200-42814000	Weak transcription	Spleen	Spleen

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