Variant report

Variant	rs11129977
Chromosome Location	chr3:42851320-42851321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11129975	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11129976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11922832	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12491179	0.83[EUR][1000 genomes]
rs12639142	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13070029	0.95[EUR][1000 genomes]
rs13096498	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2372110	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs339671	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs339731	0.82[EUR][1000 genomes]
rs34868846	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35584330	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3843369	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3846063	0.89[EUR][1000 genomes]
rs4683332	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4683335	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442067	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6779561	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641046	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42846800-42856400	Weak transcription	Right Atrium	heart
2	chr3:42847000-42852200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:42847000-42852400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:42847200-42852000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:42847200-42852200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:42847200-42852200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:42847200-42852400	Weak transcription	Pancreas	Pancrea
8	chr3:42847200-42856400	Weak transcription	NHEK	skin
9	chr3:42847400-42852800	Weak transcription	Fetal Heart	heart
10	chr3:42847400-42852800	Weak transcription	Stomach Mucosa	stomach
11	chr3:42847400-42856200	Weak transcription	Colonic Mucosa	Colon
12	chr3:42847600-42852200	Weak transcription	K562	blood
13	chr3:42849000-42852200	Weak transcription	HepG2	liver
14	chr3:42849400-42853000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:42849800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:42850200-42852000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:42850800-42851400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:42850800-42854200	Active TSS	Placenta	Placenta
19	chr3:42851000-42851800	Active TSS	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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