Variant report

Variant	rs11133351
Chromosome Location	chr4:55822387-55822388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11133352	0.90[EUR][1000 genomes]
rs11133353	0.90[EUR][1000 genomes]
rs11728782	0.85[EUR][1000 genomes]
rs12499627	0.90[EUR][1000 genomes]
rs12506379	0.85[EUR][1000 genomes]
rs12510427	0.85[EUR][1000 genomes]
rs12641950	0.90[EUR][1000 genomes]
rs34239528	0.90[EUR][1000 genomes]
rs73234279	0.90[EUR][1000 genomes]
rs73234280	0.90[EUR][1000 genomes]
rs73234283	0.90[EUR][1000 genomes]
rs73234284	0.86[EUR][1000 genomes]
rs73234287	0.90[EUR][1000 genomes]
rs73234290	0.85[EUR][1000 genomes]
rs73234291	0.85[EUR][1000 genomes]
rs73234292	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55821000-55822400	Enhancers	Fetal Heart	heart
3	chr4:55821200-55824400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:55821400-55823800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:55821400-55824200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:55821400-55824200	Weak transcription	NHDF-Ad	bronchial
7	chr4:55821400-55824200	Weak transcription	NHLF	lung
8	chr4:55821400-55824400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:55821600-55824000	Weak transcription	Placenta	Placenta
10	chr4:55821600-55824600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:55822000-55825000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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