Variant report

Variant	rs12499627
Chromosome Location	chr4:55849277-55849278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11133351	0.90[EUR][1000 genomes]
rs11133352	1.00[EUR][1000 genomes]
rs11133353	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11728782	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12506379	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12510427	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12641950	1.00[EUR][1000 genomes]
rs34239528	1.00[EUR][1000 genomes]
rs6828513	0.81[EUR][1000 genomes]
rs73234279	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234280	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234283	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234284	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234287	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234290	0.95[EUR][1000 genomes]
rs73234291	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234292	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829938	chr4:55836964-55857893	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55843400-55852600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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