Variant report

Variant	rs12641950
Chromosome Location	chr4:55838854-55838855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11133351	0.90[EUR][1000 genomes]
rs11133352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11133353	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11728782	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12499627	1.00[EUR][1000 genomes]
rs12506379	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12510427	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12641995	0.91[AMR][1000 genomes]
rs34239528	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828513	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73234279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234280	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234283	1.00[EUR][1000 genomes]
rs73234284	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234287	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234290	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234291	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234292	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829938	chr4:55836964-55857893	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55838400-55842800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:55838400-55842800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:55838400-55843000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:55838400-55843200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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