Variant report

Variant	rs73234284
Chromosome Location	chr4:55852688-55852689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11133351	0.86[EUR][1000 genomes]
rs11133352	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11133353	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11728782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12499627	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12506379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12510427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12641950	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12641995	0.92[AMR][1000 genomes]
rs34239528	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6828513	0.94[AMR][1000 genomes]
rs73234279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234283	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73234290	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73234291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73234292	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829938	chr4:55836964-55857893	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55851200-55853200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:55851400-55853400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:55851400-55853400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:55851800-55853600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:55852000-55853200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:55852000-55853600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:55852200-55853400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr4:55852200-55853400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:55852600-55853000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr4:55852600-55853000	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:55852600-55853200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:55852600-55853200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:55852600-55853400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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