Variant report

Variant	rs11139716
Chromosome Location	chr9:85348291-85348292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85347850..85349728-chr9:85356850..85359786,2	MCF-7	breast:
2	chr9:85348158..85350736-chr9:85359906..85361652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233309	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11139702	0.92[ASN][1000 genomes]
rs11139703	0.91[ASN][1000 genomes]
rs11139704	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11139705	0.91[ASN][1000 genomes]
rs11139707	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139708	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139709	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139717	0.98[ASN][1000 genomes]
rs11139722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139723	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12236312	0.92[ASN][1000 genomes]
rs1332473	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17085735	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4510939	0.96[ASN][1000 genomes]
rs62579110	0.92[ASN][1000 genomes]
rs62579111	0.92[ASN][1000 genomes]
rs62579112	0.92[ASN][1000 genomes]
rs62579113	0.92[ASN][1000 genomes]
rs62579114	0.92[ASN][1000 genomes]
rs62579115	0.92[ASN][1000 genomes]
rs62579116	0.92[ASN][1000 genomes]
rs62579117	0.92[ASN][1000 genomes]
rs62579137	0.96[ASN][1000 genomes]
rs6559680	0.96[ASN][1000 genomes]
rs72737494	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72737498	0.92[ASN][1000 genomes]
rs72739125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7869575	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85345000-85349200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:85346000-85351400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85347000-85348600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:85347200-85348400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:85347200-85348400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:85347200-85348400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:85347200-85348400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:85347200-85352200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:85347200-85353000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:85347400-85348400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr9:85347400-85348400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:85347400-85348600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:85347600-85348400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:85347600-85353400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:85347800-85348400	Enhancers	Fetal Lung	lung
16	chr9:85348200-85349400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:85348200-85350000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:85348200-85361400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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