Variant report

Variant	rs17085735
Chromosome Location	chr9:85330516-85330517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11139702	1.00[ASN][1000 genomes]
rs11139703	0.99[ASN][1000 genomes]
rs11139704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139705	0.99[ASN][1000 genomes]
rs11139707	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139708	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139709	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139711	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11139717	0.91[ASN][1000 genomes]
rs11139722	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11139723	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12236312	1.00[ASN][1000 genomes]
rs1332473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510939	0.92[ASN][1000 genomes]
rs62579110	1.00[ASN][1000 genomes]
rs62579111	1.00[ASN][1000 genomes]
rs62579112	1.00[ASN][1000 genomes]
rs62579113	1.00[ASN][1000 genomes]
rs62579114	1.00[ASN][1000 genomes]
rs62579115	1.00[ASN][1000 genomes]
rs62579116	1.00[ASN][1000 genomes]
rs62579117	1.00[ASN][1000 genomes]
rs62579137	0.92[ASN][1000 genomes]
rs6559680	0.92[ASN][1000 genomes]
rs72737494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737498	1.00[ASN][1000 genomes]
rs72739125	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7869575	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85330400-85335600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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