Variant report

Variant	rs11139709
Chromosome Location	chr9:85338256-85338257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85337489..85340420-chr9:85340684..85343232,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11139702	0.93[ASN][1000 genomes]
rs11139703	0.92[ASN][1000 genomes]
rs11139704	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139705	0.92[ASN][1000 genomes]
rs11139707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139711	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139717	0.93[ASN][1000 genomes]
rs11139722	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11139723	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139727	1.00[MEX][hapmap]
rs12236312	0.93[ASN][1000 genomes]
rs1332473	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17085735	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4510939	0.92[ASN][1000 genomes]
rs62579110	0.93[ASN][1000 genomes]
rs62579111	0.93[ASN][1000 genomes]
rs62579112	0.93[ASN][1000 genomes]
rs62579113	0.93[ASN][1000 genomes]
rs62579114	0.93[ASN][1000 genomes]
rs62579115	0.93[ASN][1000 genomes]
rs62579116	0.93[ASN][1000 genomes]
rs62579117	0.93[ASN][1000 genomes]
rs62579137	0.92[ASN][1000 genomes]
rs6559680	0.92[ASN][1000 genomes]
rs72737494	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72737498	0.93[ASN][1000 genomes]
rs72739125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869575	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85331800-85345000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85336000-85344800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:85336400-85344600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:85337200-85344800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:85337400-85344800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:85337400-85345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:85337600-85338800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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