Variant report

Variant	rs11139765
Chromosome Location	chr9:85390231-85390232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85389992..85391848-chr9:85397163..85400021,3	MCF-7	breast:
2	chr9:85389052..85391169-chr9:85418729..85421659,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10867880	0.94[ASN][1000 genomes]
rs11139733	0.87[ASN][1000 genomes]
rs11139734	0.87[ASN][1000 genomes]
rs11139735	0.87[ASN][1000 genomes]
rs11139736	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11139737	0.88[ASN][1000 genomes]
rs11139755	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139756	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139757	0.98[ASN][1000 genomes]
rs11139763	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11139764	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139768	1.00[ASN][1000 genomes]
rs11139772	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11139773	1.00[ASN][1000 genomes]
rs11139774	0.97[ASN][1000 genomes]
rs11139775	0.97[ASN][1000 genomes]
rs11139777	0.97[ASN][1000 genomes]
rs11139778	0.97[ASN][1000 genomes]
rs11139781	0.95[ASN][1000 genomes]
rs11139783	0.97[ASN][1000 genomes]
rs11139784	0.96[ASN][1000 genomes]
rs11139785	0.96[ASN][1000 genomes]
rs11562396	0.98[ASN][1000 genomes]
rs12238605	0.94[ASN][1000 genomes]
rs61035164	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7039347	0.97[ASN][1000 genomes]
rs73477989	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73477996	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73478001	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853662	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7865518	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7865827	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867099	0.94[ASN][1000 genomes]
rs7869282	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7869890	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7870272	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7871433	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7873765	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7875501	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85374400-85391000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85377400-85391200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:85378000-85390800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:85390000-85391200	Weak transcription	Spleen	Spleen
5	chr9:85390000-85391600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:85390000-85395400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr9:85390200-85390800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:85390200-85391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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