Variant report

Variant	rs11562396
Chromosome Location	chr9:85383442-85383443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10867880	0.92[ASN][1000 genomes]
rs11139733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139735	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139736	0.90[ASN][1000 genomes]
rs11139737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11139755	0.99[ASN][1000 genomes]
rs11139756	0.99[ASN][1000 genomes]
rs11139757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139763	0.90[ASN][1000 genomes]
rs11139764	0.95[ASN][1000 genomes]
rs11139765	0.98[ASN][1000 genomes]
rs11139767	0.98[ASN][1000 genomes]
rs11139768	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139772	0.98[ASN][1000 genomes]
rs11139773	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139774	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139775	0.95[ASN][1000 genomes]
rs11139777	0.95[ASN][1000 genomes]
rs11139778	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139781	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139783	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139784	0.95[ASN][1000 genomes]
rs11139785	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12238605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61035164	1.00[ASN][1000 genomes]
rs7039347	0.95[ASN][1000 genomes]
rs73477989	1.00[ASN][1000 genomes]
rs73477996	1.00[ASN][1000 genomes]
rs73478001	1.00[ASN][1000 genomes]
rs7853662	0.95[ASN][1000 genomes]
rs7865518	0.95[ASN][1000 genomes]
rs7865827	1.00[ASN][1000 genomes]
rs7867099	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7869282	0.93[ASN][1000 genomes]
rs7869890	1.00[ASN][1000 genomes]
rs7870272	1.00[ASN][1000 genomes]
rs7871433	0.95[ASN][1000 genomes]
rs7873765	0.89[ASN][1000 genomes]
rs7875501	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2762819	chr9:85376276-85384244	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2764140	chr9:85376276-85384244	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv442159	chr9:85376569-85384244	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85374400-85391000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85377400-85391200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:85378000-85390800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:85383400-85383800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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