Variant report

Variant	rs7875501
Chromosome Location	chr9:85391790-85391791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85389992..85391848-chr9:85397163..85400021,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10867880	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139733	0.87[ASN][1000 genomes]
rs11139734	0.87[ASN][1000 genomes]
rs11139735	0.87[ASN][1000 genomes]
rs11139736	0.88[ASN][1000 genomes]
rs11139737	0.88[ASN][1000 genomes]
rs11139755	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11139756	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11139757	0.98[ASN][1000 genomes]
rs11139763	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11139764	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11139765	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11139767	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11139768	1.00[ASN][1000 genomes]
rs11139772	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139773	1.00[ASN][1000 genomes]
rs11139774	0.97[ASN][1000 genomes]
rs11139775	0.97[ASN][1000 genomes]
rs11139777	0.97[ASN][1000 genomes]
rs11139778	0.97[ASN][1000 genomes]
rs11139779	0.81[EUR][1000 genomes]
rs11139781	0.95[ASN][1000 genomes]
rs11139783	0.97[ASN][1000 genomes]
rs11139784	0.96[ASN][1000 genomes]
rs11139785	0.96[ASN][1000 genomes]
rs11139794	0.95[EUR][1000 genomes]
rs11562396	0.98[ASN][1000 genomes]
rs11788842	0.81[EUR][1000 genomes]
rs12238605	0.94[ASN][1000 genomes]
rs61035164	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7032810	0.83[EUR][1000 genomes]
rs7039347	0.97[ASN][1000 genomes]
rs73477989	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73477996	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73478001	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7853662	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7859706	0.83[EUR][1000 genomes]
rs7865518	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7865827	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7867099	0.94[ASN][1000 genomes]
rs7869282	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7869890	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7870272	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7871433	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7873765	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv518664	chr9:85391686-85399923	Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85390000-85395400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr9:85390800-85400600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr9:85391200-85391800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
4	chr9:85391200-85392200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:85391200-85392800	Enhancers	Placenta	Placenta
6	chr9:85391400-85391800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:85391600-85392400	Weak transcription	Spleen	Spleen
8	chr9:85391600-85394800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:85391600-85404000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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