Variant report

Variant	rs11139733
Chromosome Location	chr9:85365563-85365564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10867880	0.81[ASN][1000 genomes]
rs11139727	0.90[CHB][hapmap]
rs11139734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139736	0.99[ASN][1000 genomes]
rs11139737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139755	0.90[ASN][1000 genomes]
rs11139756	0.90[ASN][1000 genomes]
rs11139757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139764	0.84[ASN][1000 genomes]
rs11139765	0.87[ASN][1000 genomes]
rs11139767	0.87[ASN][1000 genomes]
rs11139768	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139772	0.87[ASN][1000 genomes]
rs11139773	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139774	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139775	0.85[ASN][1000 genomes]
rs11139777	0.85[ASN][1000 genomes]
rs11139778	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139781	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139783	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139784	0.84[ASN][1000 genomes]
rs11139785	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11562396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12238605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61035164	0.89[ASN][1000 genomes]
rs7039347	0.85[ASN][1000 genomes]
rs73477989	0.89[ASN][1000 genomes]
rs73477996	0.89[ASN][1000 genomes]
rs73478001	0.89[ASN][1000 genomes]
rs7853662	0.94[ASN][1000 genomes]
rs7865518	0.86[ASN][1000 genomes]
rs7865827	0.89[ASN][1000 genomes]
rs7867099	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869282	0.82[ASN][1000 genomes]
rs7869890	0.89[ASN][1000 genomes]
rs7870272	0.89[ASN][1000 genomes]
rs7871433	0.94[ASN][1000 genomes]
rs7875501	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85361600-85365600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:85361600-85365600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:85362000-85372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:85363200-85372400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:85364400-85366200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:85364600-85365800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:85364600-85366000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:85364800-85365600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:85364800-85365600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:85365200-85365600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:85365400-85366000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:85365400-85366200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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