Variant report

Variant	rs11140291
Chromosome Location	chr9:86524164-86524165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10780645	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs11140229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140252	1.00[CHB][hapmap]
rs11140254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11140308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11140310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11140314	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11140316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11559387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12235653	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12235969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12237297	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3750407	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv438108	chr9:86488586-86542206	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv972767	chr9:86522655-86530446	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:86461600-86535400	Weak transcription	Ovary	ovary
3	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
4	chr9:86462600-86535200	Weak transcription	Brain Anterior Caudate	brain
5	chr9:86481000-86535800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:86491000-86535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:86491200-86535200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:86496000-86535000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:86496400-86533000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:86499400-86535000	Weak transcription	Fetal Kidney	kidney
11	chr9:86500000-86534800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:86500200-86535200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:86500200-86535200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:86500200-86535600	Weak transcription	Lung	lung
15	chr9:86502000-86532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:86502600-86535000	Weak transcription	Fetal Lung	lung
17	chr9:86506400-86534800	Weak transcription	Pancreas	Pancrea
18	chr9:86508200-86535600	Weak transcription	Esophagus	oesophagus
19	chr9:86512400-86535400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:86512600-86535400	Weak transcription	Placenta	Placenta
21	chr9:86513200-86534800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:86516200-86535000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:86517400-86535200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr9:86517600-86535000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:86518200-86530800	Weak transcription	Spleen	Spleen
26	chr9:86518800-86526400	Weak transcription	Fetal Intestine Large	intestine
27	chr9:86518800-86535000	Weak transcription	Primary B cells from cord blood	blood
28	chr9:86518800-86535000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:86518800-86535200	Weak transcription	Thymus	Thymus
30	chr9:86519000-86535000	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:86519000-86535400	Weak transcription	Fetal Stomach	stomach
32	chr9:86520000-86533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:86520400-86535400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:86523800-86535000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:86523800-86535000	Weak transcription	Fetal Muscle Trunk	muscle

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