Variant report

Variant	rs12235969
Chromosome Location	chr9:86442593-86442594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11140178	0.85[EUR][1000 genomes]
rs11140179	1.00[EUR][1000 genomes]
rs11140182	1.00[EUR][1000 genomes]
rs11140183	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11140191	1.00[EUR][1000 genomes]
rs11140192	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11140197	0.86[EUR][1000 genomes]
rs11140199	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11140203	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11140215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11140217	1.00[EUR][1000 genomes]
rs11140219	1.00[EUR][1000 genomes]
rs11140225	1.00[EUR][1000 genomes]
rs11140228	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140230	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140235	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140248	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140250	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140252	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140257	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140258	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140266	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140269	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140270	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140310	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11140314	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11140316	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11559387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11560627	1.00[EUR][1000 genomes]
rs12235151	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12235653	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12236455	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12236743	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12237262	1.00[EUR][1000 genomes]
rs12237297	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12237555	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238365	1.00[EUR][1000 genomes]
rs12238575	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2282221	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2282222	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28627139	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28655802	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3750407	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3763626	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2761538	chr9:86401015-86451943	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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