Variant report

Variant	rs11140716
Chromosome Location	chr9:72478768-72478769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11140630	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11140750	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11140836	1.00[CHD][hapmap]
rs11140842	1.00[CHD][hapmap]
rs12378305	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.85[MEX][hapmap]
rs12379253	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13283032	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13284442	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13295978	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2871283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34702508	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35822389	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7022971	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7027129	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7038189	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7469302	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs766002	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7852049	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72471000-72481800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72475000-72487000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:72475400-72479000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:72475400-72487600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:72475400-72495200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:72476200-72492800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:72476400-72481000	Weak transcription	Osteobl	bone
9	chr9:72476400-72481800	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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