Variant report

Variant	rs11141246
Chromosome Location	chr9:72624822-72624823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10217790	0.91[ASN][1000 genomes]
rs1027282	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10511978	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10868348	0.90[ASN][1000 genomes]
rs11141101	0.90[ASN][1000 genomes]
rs11141106	0.92[ASN][1000 genomes]
rs11141122	0.92[ASN][1000 genomes]
rs11141127	0.83[ASN][1000 genomes]
rs11141260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11788010	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11789512	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11790329	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12336812	0.92[ASN][1000 genomes]
rs12353051	0.92[ASN][1000 genomes]
rs12353052	0.92[ASN][1000 genomes]
rs12551035	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12551904	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12552060	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12553082	0.88[EUR][1000 genomes]
rs12554412	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12554849	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12555905	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683555	0.92[ASN][1000 genomes]
rs12683959	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12686422	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12686803	0.92[ASN][1000 genomes]
rs17442733	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17443354	0.92[ASN][1000 genomes]
rs17522643	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17522671	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2131427	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2131428	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2172432	0.92[ASN][1000 genomes]
rs2201232	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2220736	0.91[ASN][1000 genomes]
rs2220737	0.92[ASN][1000 genomes]
rs4256644	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4397475	0.88[EUR][1000 genomes]
rs4457397	0.88[EUR][1000 genomes]
rs4458932	0.88[EUR][1000 genomes]
rs55897975	0.88[EUR][1000 genomes]
rs56200303	0.88[EUR][1000 genomes]
rs56380265	0.92[ASN][1000 genomes]
rs56399669	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57388366	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61210535	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62572583	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62572585	0.92[ASN][1000 genomes]
rs62572586	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62572589	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62572598	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62572600	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62572601	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62572604	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62572605	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62572631	0.88[EUR][1000 genomes]
rs62572633	0.88[EUR][1000 genomes]
rs62572634	0.88[EUR][1000 genomes]
rs66542913	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7026012	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7026154	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72709193	0.88[EUR][1000 genomes]
rs73456376	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs954376	0.88[EUR][1000 genomes]
rs954378	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72619800-72626200	Weak transcription	HSMM	muscle
2	chr9:72619800-72627600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:72621200-72635400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:72621400-72628800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:72621600-72626600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:72621800-72626000	Weak transcription	HSMMtube	muscle
7	chr9:72621800-72626200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:72621800-72626200	Weak transcription	Fetal Lung	lung
9	chr9:72621800-72626200	Weak transcription	NHDF-Ad	bronchial
10	chr9:72621800-72626400	Weak transcription	NH-A	brain
11	chr9:72621800-72626400	Weak transcription	NHLF	lung
12	chr9:72621800-72627000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:72621800-72628400	Weak transcription	Osteobl	bone
14	chr9:72622000-72626200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72622000-72626400	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:72622000-72626800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:72622000-72627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:72622000-72628200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:72622000-72628400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:72623000-72628200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:72623400-72627600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:72623400-72627600	Weak transcription	HMEC	breast
23	chr9:72623400-72628200	Weak transcription	NHEK	skin
24	chr9:72624800-72625000	Enhancers	Sigmoid Colon	Sigmoid Colon

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