Variant report

Variant	rs12353052
Chromosome Location	chr9:72600133-72600134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10217790	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1027282	0.99[ASN][1000 genomes]
rs10511978	0.99[ASN][1000 genomes]
rs10868348	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11141101	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11141106	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141122	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141127	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11141246	0.92[ASN][1000 genomes]
rs11141260	0.95[ASN][1000 genomes]
rs11788010	0.99[ASN][1000 genomes]
rs11789512	0.89[ASN][1000 genomes]
rs11790329	0.89[ASN][1000 genomes]
rs12336812	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353051	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12551035	0.95[ASN][1000 genomes]
rs12551904	0.95[ASN][1000 genomes]
rs12552060	0.99[ASN][1000 genomes]
rs12554412	0.88[ASN][1000 genomes]
rs12554849	0.89[ASN][1000 genomes]
rs12555905	0.95[ASN][1000 genomes]
rs12683555	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683959	0.99[ASN][1000 genomes]
rs12686422	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12686803	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442733	0.97[ASN][1000 genomes]
rs17443354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522643	0.89[ASN][1000 genomes]
rs17522671	0.89[ASN][1000 genomes]
rs2131427	0.99[ASN][1000 genomes]
rs2131428	0.99[ASN][1000 genomes]
rs2172432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201232	0.99[ASN][1000 genomes]
rs2220736	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2220737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256644	0.94[ASN][1000 genomes]
rs56380265	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56399669	0.95[ASN][1000 genomes]
rs57388366	0.93[ASN][1000 genomes]
rs61210535	0.99[ASN][1000 genomes]
rs62572583	0.97[ASN][1000 genomes]
rs62572585	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62572586	0.99[ASN][1000 genomes]
rs62572589	0.99[ASN][1000 genomes]
rs62572598	0.99[ASN][1000 genomes]
rs62572600	0.95[ASN][1000 genomes]
rs62572601	0.97[ASN][1000 genomes]
rs62572604	0.89[ASN][1000 genomes]
rs62572605	0.89[ASN][1000 genomes]
rs66542913	0.89[ASN][1000 genomes]
rs7026012	0.99[ASN][1000 genomes]
rs7026154	0.99[ASN][1000 genomes]
rs73456376	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72597200-72601400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:72597400-72608000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:72598000-72601800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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