Variant report

Variant	rs56380265
Chromosome Location	chr9:72597370-72597371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72596256..72598713-chr9:72601006..72603750,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10217790	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1027282	0.99[ASN][1000 genomes]
rs10511978	0.99[ASN][1000 genomes]
rs10868348	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11141101	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11141106	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141127	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11141246	0.92[ASN][1000 genomes]
rs11141260	0.95[ASN][1000 genomes]
rs11788010	0.99[ASN][1000 genomes]
rs11789512	0.89[ASN][1000 genomes]
rs11790329	0.89[ASN][1000 genomes]
rs12336812	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12551035	0.95[ASN][1000 genomes]
rs12551904	0.95[ASN][1000 genomes]
rs12552060	0.99[ASN][1000 genomes]
rs12554412	0.88[ASN][1000 genomes]
rs12554849	0.89[ASN][1000 genomes]
rs12555905	0.95[ASN][1000 genomes]
rs12683555	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683959	0.99[ASN][1000 genomes]
rs12686422	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12686803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442733	0.97[ASN][1000 genomes]
rs17443354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522643	0.89[ASN][1000 genomes]
rs17522671	0.89[ASN][1000 genomes]
rs2131427	0.99[ASN][1000 genomes]
rs2131428	0.99[ASN][1000 genomes]
rs2172432	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201232	0.99[ASN][1000 genomes]
rs2220736	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2220737	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256644	0.94[ASN][1000 genomes]
rs56399669	0.95[ASN][1000 genomes]
rs57388366	0.93[ASN][1000 genomes]
rs61210535	0.99[ASN][1000 genomes]
rs62572583	0.97[ASN][1000 genomes]
rs62572585	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62572586	0.99[ASN][1000 genomes]
rs62572589	0.99[ASN][1000 genomes]
rs62572598	0.99[ASN][1000 genomes]
rs62572600	0.95[ASN][1000 genomes]
rs62572601	0.97[ASN][1000 genomes]
rs62572604	0.89[ASN][1000 genomes]
rs62572605	0.89[ASN][1000 genomes]
rs66542913	0.89[ASN][1000 genomes]
rs7026012	0.99[ASN][1000 genomes]
rs7026154	0.99[ASN][1000 genomes]
rs73456376	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72591200-72598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72594400-72597400	Enhancers	NHLF	lung
3	chr9:72595600-72597400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:72595600-72597600	Enhancers	HSMM	muscle
5	chr9:72595800-72597400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:72595800-72597800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:72596000-72597400	Enhancers	NH-A	brain
8	chr9:72596200-72597400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:72596200-72597400	Enhancers	Osteobl	bone
10	chr9:72596400-72597400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:72596600-72597400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:72596600-72597400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:72596800-72597400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:72596800-72597400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:72596800-72597400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:72597200-72598000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:72597200-72601400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links