Variant report

Variant	rs11142421
Chromosome Location	chr9:73044635-73044636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10780934	0.85[EUR][1000 genomes]
rs11142419	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475820	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17455513	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17455773	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17534370	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41530345	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60480667	0.80[ASN][1000 genomes]
rs73462451	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73462466	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73462472	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73462475	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73462480	0.80[ASN][1000 genomes]
rs73462482	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7853214	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs915489	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs915490	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73037600-73050400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:73037800-73049800	Weak transcription	HUVEC	blood vessel
3	chr9:73038800-73050600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:73041600-73053400	Weak transcription	Psoas Muscle	Psoas
5	chr9:73043000-73048400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:73043000-73053200	Weak transcription	Stomach Mucosa	stomach
7	chr9:73044200-73045200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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