Variant report

Variant	rs17455773
Chromosome Location	chr9:73067164-73067165
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10780934	0.83[EUR][1000 genomes]
rs11142419	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11142421	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1475820	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17455513	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17534370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41530345	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60480667	0.85[ASN][1000 genomes]
rs73462451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73462466	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73462472	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73462475	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73462480	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73462482	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7853214	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs915489	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs915490	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73053600-73071000	Weak transcription	Right Atrium	heart
2	chr9:73064600-73071000	Weak transcription	Right Ventricle	heart
3	chr9:73065400-73070800	Weak transcription	Adipose Nuclei	Adipose
4	chr9:73066000-73071000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:73066400-73067600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:73066400-73070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:73066600-73067400	Enhancers	Psoas Muscle	Psoas
8	chr9:73066600-73067600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:73066800-73067600	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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