Variant report

Variant	rs73462482
Chromosome Location	chr9:73085689-73085690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73026142..73029023-chr9:73084919..73087597,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11142419	0.82[ASN][1000 genomes]
rs11142421	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1475820	0.82[EUR][1000 genomes]
rs17455513	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17455773	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17534370	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41530345	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60480667	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73462451	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73462466	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73462472	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462475	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853214	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915489	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs915490	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73077600-73087800	Weak transcription	Gastric	stomach
2	chr9:73080400-73086200	Enhancers	Left Ventricle	heart
3	chr9:73080400-73086400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:73081600-73086400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:73082400-73086000	Enhancers	Right Atrium	heart
6	chr9:73082600-73086400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:73082600-73087600	Weak transcription	Esophagus	oesophagus
8	chr9:73082600-73091600	Weak transcription	HSMMtube	muscle
9	chr9:73082600-73092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:73082800-73087200	Weak transcription	HSMM	muscle
11	chr9:73082800-73087200	Weak transcription	Osteobl	bone
12	chr9:73083200-73087200	Weak transcription	Right Ventricle	heart
13	chr9:73083400-73086400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:73083400-73086400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr9:73083600-73086000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr9:73083600-73086000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:73083600-73086200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:73083600-73090800	Enhancers	Liver	Liver
19	chr9:73084000-73086000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:73084000-73086000	Enhancers	Pancreas	Pancrea
21	chr9:73084200-73086000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr9:73084200-73086000	Enhancers	Psoas Muscle	Psoas
23	chr9:73084200-73086400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr9:73084800-73085800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:73084800-73086000	Enhancers	Primary T cells from cord blood	blood
26	chr9:73084800-73086000	Enhancers	Duodenum Mucosa	Duodenum
27	chr9:73084800-73086000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr9:73084800-73086200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:73084800-73086200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr9:73084800-73086200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:73084800-73086200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:73084800-73086200	Enhancers	Brain Anterior Caudate	brain
33	chr9:73084800-73086200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:73084800-73086200	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr9:73084800-73086200	Enhancers	Small Intestine	intestine
36	chr9:73084800-73086200	Enhancers	NHDF-Ad	bronchial
37	chr9:73084800-73086400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:73084800-73086400	Enhancers	Fetal Heart	heart
39	chr9:73084800-73086400	Enhancers	HUVEC	blood vessel
40	chr9:73085000-73085800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:73085000-73085800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr9:73085000-73085800	Enhancers	Placenta	Placenta
43	chr9:73085000-73085800	Enhancers	Lung	lung
44	chr9:73085000-73086000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:73085000-73086000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr9:73085000-73086000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr9:73085000-73086000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr9:73085000-73086000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:73085000-73086200	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr9:73085000-73086200	Enhancers	Fetal Intestine Large	intestine

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