Variant report

Variant	rs73462472
Chromosome Location	chr9:73077198-73077199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11142419	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142421	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1475820	0.84[EUR][1000 genomes]
rs17455513	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17455773	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17534370	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41530345	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60480667	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73462451	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73462466	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73462475	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462480	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73462482	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853214	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915489	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs915490	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73067600-73080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:73071400-73078600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:73071400-73081800	Weak transcription	Lung	lung
4	chr9:73071600-73082200	Weak transcription	Pancreas	Pancrea
5	chr9:73072400-73084800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:73075600-73078600	Weak transcription	Right Atrium	heart
7	chr9:73076800-73078200	Enhancers	Psoas Muscle	Psoas
8	chr9:73077000-73077600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:73077000-73077600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:73077000-73077600	Enhancers	Gastric	stomach
11	chr9:73077000-73077600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr9:73077000-73079200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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