Variant report

Variant	rs11142512
Chromosome Location	chr9:73237686-73237687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11142509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142513	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3829095	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58391509	1.00[EUR][1000 genomes]
rs72718987	0.92[EUR][1000 genomes]
rs7862783	0.90[EUR][1000 genomes]
rs7865398	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs879857	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73217400-73242400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:73224800-73241600	Weak transcription	Ovary	ovary
3	chr9:73230600-73243200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:73230800-73243000	Weak transcription	Brain Anterior Caudate	brain
5	chr9:73235200-73239600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:73235200-73255400	Weak transcription	Brain Substantia Nigra	brain
7	chr9:73235400-73245200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:73235400-73255400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73235800-73243000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:73237000-73237800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73237600-73237800	Weak transcription	Aorta	Aorta
12	chr9:73237600-73256000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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