Variant report

Variant	rs11142509
Chromosome Location	chr9:73233321-73233322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10735599	0.88[CEU][hapmap]
rs11142496	0.88[CEU][hapmap]
rs11142512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142513	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3829095	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58391509	1.00[EUR][1000 genomes]
rs72718987	0.92[EUR][1000 genomes]
rs7862783	0.90[EUR][1000 genomes]
rs7865398	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs879857	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73215800-73236800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:73217400-73233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:73217400-73242400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:73217600-73236400	Weak transcription	Fetal Kidney	kidney
5	chr9:73224800-73241600	Weak transcription	Ovary	ovary
6	chr9:73227200-73236600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:73228000-73236600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:73228200-73235800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:73228200-73236800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73230200-73237400	Weak transcription	Aorta	Aorta
11	chr9:73230400-73235400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:73230400-73237200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:73230600-73243200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:73230800-73233400	Weak transcription	Right Ventricle	heart
15	chr9:73230800-73243000	Weak transcription	Brain Anterior Caudate	brain
16	chr9:73231000-73233800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:73231600-73235400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:73231800-73233400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:73231800-73233600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:73231800-73236400	Weak transcription	Brain Angular Gyrus	brain
21	chr9:73232000-73233600	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:73232000-73235800	Weak transcription	Fetal Brain Female	brain
23	chr9:73232000-73237000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:73232200-73233400	Weak transcription	Psoas Muscle	Psoas
25	chr9:73232200-73233800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:73232200-73234800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:73232200-73235200	Weak transcription	Brain Germinal Matrix	brain
28	chr9:73232200-73235400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:73232400-73233400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:73232400-73234600	Weak transcription	Brain Substantia Nigra	brain
31	chr9:73233200-73234400	Enhancers	Skeletal Muscle Male	skeletal muscle

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